dynast.benchmarking.simulation
Module Contents
Functions
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Helper function to run simulations in batches. |
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Attributes
- dynast.benchmarking.simulation.simulate_reads(sequence, p_e, p_c, pi, l=100, n=100, seed=None)[source]
- dynast.benchmarking.simulation.estimate(df_counts, p_e, p_c, pi, estimate_p_e=False, estimate_p_c=False, estimate_pi=True, model=None, nasc=False)[source]
- dynast.benchmarking.simulation._simulate(p_e, p_c, pi, sequence=None, k=10000, l=100, n=100, estimate_p_e=False, estimate_p_c=False, estimate_pi=True, seed=None, model=None, nasc=False)[source]
- dynast.benchmarking.simulation.simulate(p_e, p_c, pi, sequence=None, k=10000, l=100, n=100, n_runs=16, n_threads=8, estimate_p_e=False, estimate_p_c=False, estimate_pi=True, model=None, nasc=False)[source]