Source code for dynast.constants

[docs]STATS_PREFIX = 'run_info'



[docs]STAR_SOLO_DIR = 'Solo.out'


[docs]STAR_GENE_DIR = 'Gene'


[docs]STAR_RAW_DIR = 'raw'


[docs]STAR_FILTERED_DIR = 'filtered'


[docs]STAR_VELOCYTO_DIR = 'Velocyto'


[docs]STAR_BAM_FILENAME = 'Aligned.sortedByCoord.out.bam'


[docs]STAR_BAI_FILENAME = 'Aligned.sortedByCoord.out.bai'


[docs]STAR_BARCODES_FILENAME = 'barcodes.tsv'


[docs]STAR_FEATURES_FILENAME = 'features.tsv'


[docs]STAR_MATRIX_FILENAME = 'matrix.mtx'



[docs]CONSENSUS_BAM_FILENAME = 'consensus.bam'



[docs]COUNT_DIR = 'count'


[docs]PARSE_DIR = '0_parse'


[docs]CONVS_FILENAME = 'convs.pkl.gz'


[docs]GENES_FILENAME = 'genes.pkl.gz'


[docs]CONVERSIONS_FILENAME = 'conversions.csv'


[docs]CONVERSIONS_INDEX_FILENAME = 'conversions.idx'


[docs]ALIGNMENTS_FILENAME = 'alignments.csv'



[docs]COVERAGE_FILENAME = 'coverage.csv'


[docs]COVERAGE_INDEX_FILENAME = 'coverage.idx'


[docs]SNPS_FILENAME = 'snps.csv'



[docs]COUNTS_PREFIX = 'counts'


[docs]ESTIMATE_DIR = 'estimate'


[docs]RATES_PREFIX = 'rates'


[docs]P_E_FILENAME = 'p_e.csv'


[docs]P_C_PREFIX = 'p_c'


[docs]AGGREGATE_FILENAME = 'aggregate.csv'



[docs]ADATA_FILENAME = 'adata.h5ad'