dynast.constants

Module Contents

dynast.constants.STATS_PREFIX = run_info[source]
dynast.constants.STAR_SOLO_DIR = Solo.out[source]
dynast.constants.STAR_GENE_DIR = Gene[source]
dynast.constants.STAR_RAW_DIR = raw[source]
dynast.constants.STAR_FILTERED_DIR = filtered[source]
dynast.constants.STAR_VELOCYTO_DIR = Velocyto[source]
dynast.constants.STAR_BAM_FILENAME = Aligned.sortedByCoord.out.bam[source]
dynast.constants.STAR_BAI_FILENAME = Aligned.sortedByCoord.out.bai[source]
dynast.constants.STAR_BARCODES_FILENAME = barcodes.tsv[source]
dynast.constants.STAR_FEATURES_FILENAME = features.tsv[source]
dynast.constants.STAR_MATRIX_FILENAME = matrix.mtx[source]
dynast.constants.CONSENSUS_BAM_FILENAME = consensus.bam[source]
dynast.constants.COUNT_DIR = count[source]
dynast.constants.PARSE_DIR = 0_parse[source]
dynast.constants.CONVS_FILENAME = convs.pkl.gz[source]
dynast.constants.GENES_FILENAME = genes.pkl.gz[source]
dynast.constants.CONVERSIONS_FILENAME = conversions.csv[source]
dynast.constants.CONVERSIONS_INDEX_FILENAME = conversions.idx[source]
dynast.constants.ALIGNMENTS_FILENAME = alignments.csv[source]
dynast.constants.COVERAGE_FILENAME = coverage.csv[source]
dynast.constants.COVERAGE_INDEX_FILENAME = coverage.idx[source]
dynast.constants.SNPS_FILENAME = snps.csv[source]
dynast.constants.COUNTS_PREFIX = counts[source]
dynast.constants.ESTIMATE_DIR = estimate[source]
dynast.constants.RATES_PREFIX = rates[source]
dynast.constants.P_E_FILENAME = p_e.csv[source]
dynast.constants.P_C_PREFIX = p_c[source]
dynast.constants.AGGREGATE_FILENAME = aggregate.csv[source]
dynast.constants.ADATA_FILENAME = adata.h5ad[source]