dynast.config

Module Contents

dynast.config.PACKAGE_PATH[source]
dynast.config.PLATFORM[source]
dynast.config.BINS_DIR[source]
dynast.config.MODELS_DIR[source]
dynast.config.MODEL_PATH[source]
dynast.config.MODEL_NAME = pi[source]
dynast.config.RECOMMENDED_MEMORY[source]
dynast.config.STAR_ARGUMENTS[source]
dynast.config.STAR_SOLO_ARGUMENTS[source]
dynast.config.NASC_ARGUMENTS[source]
dynast.config.BAM_PEEK_READS = 500000[source]
dynast.config.BAM_REQUIRED_TAGS = ['MD'][source]
dynast.config.BAM_READGROUP_TAG = RG[source]
dynast.config.BAM_BARCODE_TAG = CB[source]
dynast.config.BAM_UMI_TAG = UB[source]
dynast.config.BAM_GENE_TAG = GX[source]
dynast.config.BAM_CONSENSUS_READ_COUNT_TAG = RN[source]
dynast.config.COUNTS_SPLIT_THRESHOLD = 50000[source]
dynast.config.VELOCITY_BLACKLIST = ['unassigned', 'ambiguous'][source]